Search results for "genetics [Contractile Proteins]"

showing 10 items of 3031 documents

Potential impact of genetically modified Lepidoptera-resistant Brassica napus in biodiversity hotspots: Sicily as a theoretical model

2018

The general increase of the cultivation and trade of Bt transgenic plants resistant to Lepidoptera pests raises concerns regarding the conservation of animal and plant biodiversity. Demand for biofuels has increased the cultivation and importation of oilseed rape (Brassica napus L.), including transgenic lines. In environmental risk assessments (ERAs) for its potential future cultivation as well as for food and feed uses, the impact on wild Brassicaeae relatives and on non-target Lepidoptera should be assessed. Here we consider the potential exposure of butterflies as results of possible cultivation or naturalization of spilled seed in Sicily (Italy). Diurnal Lepidoptera, which are pollinat…

0106 biological sciences0301 basic medicinePollinationPopulationBiodiversitymedicine.disease_cause010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyLepidoptera genitalia03 medical and health sciencesPollinatorPollenmedicineNectareducationEcology Evolution Behavior and Systematicseducation.field_of_studybiologyfungifood and beveragesbiology.organism_classification030104 developmental biologyAgronomyInsect ScienceAgronomy and Crop SciencePieridaeInsect Science
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Genome analysis of the monoclonal marbled crayfish reveals genetic separation over a short evolutionary timescale

2021

The marbled crayfish (Procambarus virginalis) represents a very recently evolved parthenogenetic freshwater crayfish species that has invaded diverse habitats in Europe and in Madagascar. However, population genetic analyses have been hindered by the homogeneous genetic structure of the population and the lack of suitable tools for data analysis. We have used whole-genome sequencing to characterize reference specimens from various known wild populations. In parallel, we established a whole-genome sequencing data analysis pipeline for the population genetic analysis of nearly monoclonal genomes. Our results provide evidence for systematic genetic differences between geographically separated …

0106 biological sciences0301 basic medicinePopulation geneticsQH301-705.5ParthenogenesisPopulationMedicine (miscellaneous)Population geneticsAstacoideaBiology010603 evolutionary biology01 natural sciencesGenomeArticleEvolutionary geneticsGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesAnimalsvieraslajitBiology (General)Population GrowthEvolutionary dynamicseducationgenome analysiseducation.field_of_studyGenomeInvasive speciescrayfishHuman evolutionary geneticspartenogeneesiPopulation sizemusculoskeletal neural and ocular physiologygenomiikkaCrayfishBiological EvolutionEuropePhylogeography030104 developmental biologynervous systemEvolutionary biologyGenetic structurearticleslajiutuminenProcambarus virginalisGeneral Agricultural and Biological SciencesravutCommunications Biology
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Boolean computation in plants using post-translational genetic control and a visual output signal

2018

[EN] Due to autotrophic growing capacity and extremely rich secondary metabolism, plants should be preferred targets of synthetic biology. However, developments in plants usually run below those in other taxonomic groups. In this work we engineered genetic circuits capable of logic YES, OR and AND Boolean computation in plant tissues with a visual output signal. The circuits, which are deployed by means of Agrobacterium tumefaciens, perform with the conditional activity of the MYB transcription factor Roseal from Antirrhinum majus inducing the accumulation of anthocyanins, plant endogenous pigments that are directly visible to the naked eye or accurately quantifiable by spectrophotometric a…

0106 biological sciences0301 basic medicineProteasesmedicine.medical_treatmentRecombinant Fusion ProteinsPotyvirusBiomedical EngineeringAgrobacterium01 natural sciencesBiochemistry Genetics and Molecular Biology (miscellaneous)Anthocyanins03 medical and health sciencesViral ProteinsAntirrhinum majusAnthocyanins Biological computingmedicineAntirrhinumMYBSecondary metabolismTranscription factorSynthetic biologyPlant ProteinsProteasebiologyfungiPotyvirusfood and beveragesGeneral MedicineAgrobacterium tumefaciensbiology.organism_classificationPlants Genetically ModifiedCell biologyGENETICA030104 developmental biologySpectrophotometryGenetic circuitsPotyvirus proteaseSynthetic BiologyProtein Processing Post-Translational010606 plant biology & botanyPeptide HydrolasesPlasmidsTranscription Factors
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Molecular signatures of silencing suppression degeneracy from a complex RNA virus

2021

As genomic architectures become more complex, they begin to accumulate degenerate and redundant elements. However, analyses of the molecular mechanisms underlying these genetic architecture features remain scarce, especially in compact but sufficiently complex genomes. In the present study, we followed a proteomic approach together with a computational network analysis to reveal molecular signatures of protein function degeneracy from a plant virus (as virus-host protein-protein interactions). We employed affinity purification coupled to mass spectrometry to detect several host factors interacting with two proteins of Citrus tristeza virus (p20 and p25) that are known to function as RNA sil…

0106 biological sciences0301 basic medicineProteomicsCitrusInteraction NetworksPathogenesisPlant Sciencemedicine.disease_causePathology and Laboratory Medicine01 natural sciencesInteractomeBiochemistryBimolecular fluorescence complementationRNA interferenceRNA silencing supressorsCitrus tristeza virusMedicine and Health SciencesDegeneracy (biology)Protein Interaction MapsBiology (General)H20 Plant diseasesPlant ProteinsEcologybiologyPlant virusesEukaryotaArgonautePlantsSmall interfering RNANucleic acidsRNA silencingComputational Theory and MathematicsGenetic interferenceExperimental Organism SystemsModeling and SimulationProteomeArgonaute ProteinsHost-Pathogen InteractionsRNA ViralEpigeneticsResearch ArticleClosterovirusRNA virusViral proteinQH301-705.5Arabidopsis ThalianaPlant PathogensComputational biologyGenome ViralBrassicaResearch and Analysis MethodsModels BiologicalPlant Viral Pathogens03 medical and health sciencesCellular and Molecular NeuroscienceViral ProteinsModel OrganismsPlant and Algal ModelsTobaccomedicineGeneticsGenomesNon-coding RNAProtein InteractionsMolecular signaturesMolecular BiologyEcology Evolution Behavior and SystematicsPlant DiseasesHost Microbial InteractionsBiology and life sciencesMass spectrometryOrganismsComputational BiologyProteinsRNA virusPlant Pathologybiology.organism_classificationGene regulationRepressor Proteins030104 developmental biologyU30 Research methodsAnimal StudiesRNAGene expression010606 plant biology & botanyF30 Plant genetics and breeding
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Arbuscular mycorrhizal symbiosis mitigates the negative effects of salinity on durum wheat

2017

Arbuscular mycorrhizal (AM) symbiosis is generally considered to be effective in ameliorating the plant tolerance to salt stress. Unfortunately, the comprehension of the mechanisms implicated in salinity stress alleviation by AM symbiosis is far from being complete. Thus, an experiment was performed by growing durum wheat (Triticum durum Desf.) plants under salt-stress conditions to evaluate the influence of AM symbiosis on both the plant growth and the regulation of a number of genes related to salt stress and nutrient uptake. Durum wheat plants were grown outdoors in pots in absence or in presence of salt stress and with or without AM fungi inoculation. The inoculum consisted of a mixture…

0106 biological sciences0301 basic medicineRhizophagus irregularisSalinityLeavesGene Expressionlcsh:MedicinePlant SciencePlant RootsPolymerase Chain ReactionPhysical Chemistry01 natural sciencesNutrientMycorrhizaePlant Resistance to Abiotic Stresslcsh:ScienceTriticumBiomass (ecology)MultidisciplinaryEcologyPlant Anatomyfood and beveragesSalt TolerancePlantsSettore AGR/02 - Agronomia E Coltivazioni ErbaceeChemistryPlant PhysiologyPhysical SciencesWheatSymbiosiResearch ArticleBiology03 medical and health sciencesSymbiosisSettore AGR/07 - Genetica AgrariaPlant-Environment InteractionsBotanyGeneticsPlant DefensesGene RegulationGrassesSymbiosisBiochemistry Genetics and Molecular Biology (all)InoculationGene Expression ProfilingPlant EcologyEcology and Environmental Scienceslcsh:RfungiOrganismsFungiBiology and Life SciencesPlant RootPlant Pathologybiology.organism_classificationSporeSalinitySpecies Interactions030104 developmental biologyAgricultural and Biological Sciences (all)Chemical PropertiesArbuscular mycorrhizal symbiosislcsh:QSalt-Tolerance010606 plant biology & botanyPLOS ONE
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Borrelia afzeliialters reproductive success in a rodent host

2018

The impact of a pathogen on the fitness and behaviour of its natural host depends upon the host–parasite relationship in a given set of environmental conditions. Here, we experimentally investigated the effects ofBorrelia afzelii,one of the aetiological agents of Lyme disease in humans, on the fitness of its natural rodent host, the bank vole (Myodes glareolus), in semi-natural conditions with two contrasting host population densities. Our results show thatB. afzeliican modify the reproductive success and spacing behaviour of its rodent host, whereas host survival was not affected. Infection impaired the breeding probability of large bank voles. Reproduction was hastened in infected females…

0106 biological sciences0301 basic medicineRodentmetsämyyräOffspringHost–pathogen interactionZoologyzoonoosithost-pathogen interactionBorrelia afzeliimedicine.disease_cause010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesbiology.animalMyodes glareolusisäntäeläimetnatural hostmedicineMatingGeneral Environmental ScienceEcologyGeneral Immunology and MicrobiologybiologyReproductive successHost (biology)General Medicinezoonosislisääntyminenbiology.organism_classificationfitnessBorrelia-bakteeritBank vole030104 developmental biologyBorrelia afzeliita1181host–pathogen interactionGeneral Agricultural and Biological SciencesProceedings of the Royal Society B: Biological Sciences
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Oxidative stress and senescence in social insects: A significant but inconsistent link?

2021

The life-prolonging effects of antioxidants have long entered popular culture, but the scientific community still debates whether free radicals and the resulting oxidative stress negatively affect longevity. Social insects are intriguing models for analysing the relationship between oxidative stress and senescence because life histories differ vastly between long-lived reproductives and the genetically similar but short-lived workers. Here, we present the results of an experiment on the accumulation of oxidative damage to proteins, and a comparative analysis of the expression of 20 selected genes commonly involved in managing oxidative damage, across four species of social insects: a termit…

0106 biological sciences0301 basic medicineSenescenceAgingmedia_common.quotation_subjectLongevityZoologyIsopteraBiologySocial insectsAffect (psychology)Protein oxidationmedicine.disease_cause010603 evolutionary biology01 natural sciencesAntioxidantsGeneral Biochemistry Genetics and Molecular BiologyTranscriptomes03 medical and health sciencesSpecies SpecificitymedicineAnimalsResearch ArticlesSocialitymedia_commonAntsLongevityArticlesBeesANTOxidative StressAgeing030104 developmental biologyAgeingAntioxidant genesGeneral Agricultural and Biological SciencesProtein oxidationOxidative stress
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RNA uridylation and decay in plants

2018

RNA uridylation consists of the untemplated addition of uridines at the 3′ extremity of an RNA molecule. RNA uridylation is catalysed by terminal uridylyltransferases (TUTases), which form a subgroup of the terminal nucleotidyltransferase family, to which poly(A) polymerases also belong. The key role of RNA uridylation is to regulate RNA degradation in a variety of eukaryotes, including fission yeast, plants and animals. In plants, RNA uridylation has been mostly studied in two model species, the green algae Chlamydomonas reinhardtii and the flowering plant Arabidopsis thaliana . Plant TUTases target a variety of RNA substrates, differing in size and function. These RNA substrates include …

0106 biological sciences0301 basic medicineSmall interfering RNATerminal nucleotidyltransferaseRNA StabilitymRNAArabidopsisChlamydomonas reinhardtiiUridylationBiology01 natural sciencesRNA decayGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesRNA degradationSettore AGR/07 - Genetica AgrariamicroRNAGene silencing[SDV.BV]Life Sciences [q-bio]/Vegetal Biology[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyUridineComputingMilieux_MISCELLANEOUSPolymerase2. Zero hungerMessenger RNABiochemistry Genetics and Molecular Biology (all)fungiRNAfood and beverages[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyArticlesPlantsRibosomal RNAbiology.organism_classificationCell biology030104 developmental biologyAgricultural and Biological Sciences (all)biology.proteinRNARNA InterferenceGeneral Agricultural and Biological SciencesChlamydomonas reinhardtii010606 plant biology & botany
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Neogene paleogeography provides context for understanding the origin and spatial distribution of cryptic diversity in a widespread Balkan freshwater …

2017

BackgroundThe Balkans are a major biodiversity and endemism hotspot, worldwide. Among the freshwater biota, amphipods are known for their high cryptic diversity. However, little is known about the temporal and paleogeographic aspects of their evolutionary history. We used paleogeography as a framework for understanding the onset of diversification inGammarus roeselii: (1) we hypothesised that, given the high number of isolated waterbodies in the Balkans, the species is characterised by high level of cryptic diversity, even on a local scale; (2) the long geological history of the region might promote pre-Pleistocene divergence between lineages; (3) given thatG. roeseliithrives both in lakes …

0106 biological sciences0301 basic medicineSpecies complexPleistoceneBiodiversityBayesian analysislcsh:Medicine[ SDV.BBM.BM ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyBiology010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesPhylogeneticsBalkan peninsulaEndemismMolecular Biology[ SDV.BID ] Life Sciences [q-bio]/BiodiversityPhylogenetic treeEcologyAncient lakesGeneral Neurosciencelcsh:RBiotaGeneral MedicineEvolutionary StudiesGammaridsPhylogeographyPhylogeography030104 developmental biologyBiogeographyAquaculture Fisheries and Fish ScienceGeneral Agricultural and Biological SciencesZoologyPeerJ
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Energy intake functions and energy budgets of ectotherms and endotherms derived from their ontogenetic growth in body mass and timing of sexual matur…

2017

Abstract Ectothermic and endothermic vertebrates differ not only in their source of body temperature (environment vs. metabolism), but also in growth patterns, in timing of sexual maturation within life, and energy intake functions. Here, we present a mathematical model applicable to ectothermic and endothermic vertebrates. It is designed to test whether differences in the timing of sexual maturation within an animal's life (age at which sexual maturity is reached vs. longevity) together with its ontogenetic gain in body mass (growth curve) can predict the energy intake throughout the animal's life (food intake curve) and can explain differences in energy partitioning (between growth, repro…

0106 biological sciences0301 basic medicineStatistics and ProbabilityOntogenymedia_common.quotation_subjectZoologyGrowth010603 evolutionary biology01 natural sciencesEndothermic processGeneral Biochemistry Genetics and Molecular BiologyBody Mass IndexBody Temperature03 medical and health sciencesbiology.animalAnimalsSexual maturitySexual Maturationmedia_commonGeneral Immunology and MicrobiologybiologyApplied MathematicsLongevityVertebrateThermogenesisGeneral MedicineGrowth curve (biology)Models Theoretical030104 developmental biologyModeling and SimulationEctothermVertebratesReproductionEnergy IntakeGeneral Agricultural and Biological SciencesJournal of Theoretical Biology
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